После удаления Exchange Management Tools 2010 и установки Exchange Management Tools 2016 консоль Exchange Management Shell запускается, но командлеты Exchange недоступны. При подключении появляется warning:

VERBOSE: Connecting to exchange.server.local.
WARNING: Can't generate Export-Module for the current session using Import-PSSession.
VERBOSE: Connected to exchange.server.local.

Что помогло

Помогло выполнение в консоли Exchange Management Tools 2016.

Connect-ExchangeServer -Auto -ClearCache

Дополнительные Рекомендации

На случай если не помогло.
https://social.technet.microsoft.com/Forums/ie/en-US/025f9307-0bec-4248-933d-e7a01cd22785/how-do-i-get-rid-of-the-quotcant-generate-exportmodule-for-the-current-session-using?forum=exchange2010

Workaround solution

    Delete all under %userprofile%\AppData\Roaming\Microsoft\Exchange\RemotePowerShell\
    Log off/Log on
    in Elevated cmd: iisreset
    Wait 1 min.
    In Elevated CommandPromt type: 

C:\Windows\system32>powershell -version 2
Windows PowerShell
Copyright (C) 2009 Microsoft Corporation. All rights reserved.

PS C:\Windows\system32>

 

  6. After that in the same window run

. $env:ExchangeInstallPath\bin\RemoteExchange.ps1
Connect-ExchangeServer -Auto

 7. You will get a lot of errors and you'll be asked once to type the server FQDN, Type it.
Easy find your server FQDN in PS:
$env:COMPUTERNAME+'.'+$env:USERDNSDOMAIN
or
(Get-WmiObject win32_computersystem).DNSHostName+"."+(Get-WmiObject win32_computersystem).Domain

8. In Elevated Windows Powershell

. $env:ExchangeInstallPath\bin\RemoteExchange.ps1
Connect-ExchangeServer -Auto -ClearCache

And now you can start EMS, that should work.

I do not know why, but it helped me twice.
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